Isolation of the Arctic zone of the Russian Federation (Russian Arctic) as an independent object of public administration and socio-economic development promotes the further deepening of multi-system research of the Russian Arctic. The establishment of quality relationships between groups of regions with similar values are taken as the basis of indicators is a task for the typology of regions. The proposed typology of subjects of the Russian Arctic and their municipalities, assess the level of economic, scientific, educational and innovative development will allow the regions to more accurately generate a multilevel spatial innovation policy, as well as the justified use specific models of three types offered – generating, developing and implementing – with the creation of local innovation systems.